Basic Information
VIS ID
TVIS30005517
Fusion event
HIV-WDR64 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
241932864/241769562 (Hg38)
End
241932864/241769562 (Hg38)
Orient
+
Location type
Intronic
Target gene
WDR64
Nearest miRNA
hsa-mir-101-1/Upstream/637216; hsa-mir-3124/Downstream/1576614;
Nearest TSS
ENST00000473358/Upstream/20015; ENST00000478331/Downstream/893;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/128972, chr1-CpG: 57/Downstream/78287
Upstream sequence
TTAATGACATACTGTTCCTCTTTCGTACCCCTGAATGTGCAAGGTAACTCGTTACTTACTGAACCAGTAATACTGTCTGGGACTTAGGTGGCTGATACAt
Downstream sequence
taggttgatgcaaaattaattgtggtttttgccattgaaagtaatagaaagaGTTTACTTCATCCCAGCATTAAAGAAGGGACCACTGAAAAAAGACATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate