Basic Information
VIS ID
TVIS30005518
Fusion event
HIV-EXO1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
242043509/241880207 (Hg38)
End
242043509/241880207 (Hg38)
Orient
+
Location type
Intronic
Target gene
EXO1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-30e-5p
Nearest miRNA
hsa-mir-101-1/Upstream/747861; hsa-mir-3124/Downstream/1465969;
Nearest TSS
ENST00000473358/Upstream/1167; ENST00000518741/Downstream/5150;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/31765, chr1-CpG: 29/Downstream/176775
Upstream sequence
ACTCTTCTTATTCCTTCTAAATTTCTCCTTATGACAAAACAAAACAGTAACACAGGTGTGCATACTGGTCTAGAAGACTGTCTGTTTCTCTTCCTATGAA
Downstream sequence
CGTCTTTATCTCGTCTTTTTCATTTCTGCTTCATACTGCATCTTCTCTTACTGCCACTTGGGTACCACGGCAGTGGCTATCTTGAACATCTTTCATAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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