Basic Information
VIS ID
TVIS30005519
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
243196270/243032968 (Hg38)
End
243196270/243032968 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1900622; hsa-mir-3124/Downstream/313208;
Nearest TSS
ENST00000473358/Upstream/25500; ENST00000439562/Downstream/93730;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/142198, chr1-CpG: 34/Downstream/68670
Nearby gene
LINC01347(No orient, 23346)
Upstream sequence
agctctgagtggagagagaaaatgttccctgtggagtttatagccagaatccagctctcaaacaggtttcagcctgaactcacacaatctgtgtggcttc
Downstream sequence
caaatttgcaagctgagaatttaattcaaagtggtctcaggttgatagcagtccaaaatgctaggtaggaaaaaaaatcctctctggacaaataaatcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate