Fusion event
HIV-SMYD3 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
245992058/245828756 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/2482501; hsa-mir-3124/Downstream/1373211;
Upstream sequence
CAGATAGAAGAGGCTTCTGATACATATTAGGACATGGATGTCAGtttttctgatttttttttttttgagacagggtctcatgtcgcccaggctggagtgc
Downstream sequence
agtggcatgatctcgggctcactgcaacctccgcttcccgggttcaagcatttcttgtgcctcagcctcccaagtaactgggattacaggcatgagcccc
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.