Basic Information
VIS ID
TVIS30005526
Fusion event
HIV-LOC105373277 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
248687221/248523920 (Hg38)
End
248687221/248523920 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1I
Target gene
LOC105373277
Nearest miRNA
hsa-mir-101-1/Upstream/1321860; hsa-mir-3124/Downstream/302457;
Nearest TSS
ENST00000473358/Upstream/2305; ENST00000438623/Downstream/24836;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/586496, chr1-CpG: 49/Downstream/167809
Nearby gene
OR2G6(No orient, 1323)
Upstream sequence
GTAATTTTACTTCATATTCTCATTATGATACACATGAAAAAAGCATGAAAACATCAATGCAAATGAAGAGTAAAATGCAGGCAGAATCTGGGGTGGAAGT
Downstream sequence
GGAATTTTCAAGTGATTTAGACttttcttttttggacagggtcttgctctgttgcccaggctggagtgcagtggctcaatcatggctcactgcagccttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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