Basic Information
VIS ID
TVIS30005527
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
248703754/248540453 (Hg38)
End
248703754/248540453 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/1338393; hsa-mir-3124/Downstream/285924;
Nearest TSS
ENST00000473358/Upstream/18838; ENST00000438623/Downstream/8303;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/603029, chr1-CpG: 49/Downstream/151276
Nearby gene
OR2G6(No orient, 17856)
Upstream sequence
gaattcagtttgctagtgttgagaatctttacatccatgatcataaaataaattggcctgtaattttcttataccgtccttgtctgacattggtgttagg
Downstream sequence
gtaatgcatgaaaaaatgtgttggaaagtgcaccctttttaattgtttggaaaagtttgagaatagcattaatctgtctttagatatttggtagcaatca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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