Basic Information
VIS ID
TVIS30005529
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
3842468/3800276 (Hg38)
End
3842468/3800276 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/1724187; hsa-mir-107/Downstream/190884;
Nearest TSS
ENST00000439456/Upstream/14995; ENST00000413339/Downstream/33674;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/14342, chr10-CpG: 60/Downstream/1025657
Nearby gene
KLF6(No orient, 14995)
Nearest cancer related gene
KLF6(TSG, No orient, 14995)
Upstream sequence
ttcatggcagcatggatggaactagaggacattatgttaagtgaaataagccagaaacagaaagttaaacacctcatagtctcattcatatgtggaagct
Downstream sequence
aaataaaagttggtctcattgaagtaagaagaagaaaagaggatgccagaagctgagaagggatggggaggggaaggacaaggaaggtttgttaaaagat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate