Basic Information
VIS ID
TVIS30005531
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
3866793/3824601 (Hg38)
End
3866793/3824601 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/1748512; hsa-mir-107/Downstream/166559;
Nearest TSS
ENST00000439456/Upstream/39320; ENST00000413339/Downstream/9349;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/38667, chr10-CpG: 60/Downstream/1001332
Nearby gene
KLF6(No orient, 39320)
Nearest cancer related gene
KLF6(TSG, No orient, 39320)
Upstream sequence
TGGCTGGTGAAGTACAGAATTTGAAGTTGGATCAATTAGATCTGCTAATTCTCCTTCTCTAAGTGGTGCATAGAACAAATATTTTAAAAAATAGATTCTA
Downstream sequence
TTTGTCGCCGTGTATGAATAGAAGAAAAGATGATTCTATTGTTGCTTTTGTATATCGAAGGAGGAACTTTCTAAACTGTAAGCCTAACGATGTCTCACAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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