Basic Information
VIS ID
TVIS30005532
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
3879471/3837279 (Hg38)
End
3879471/3837279 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/1761190; hsa-mir-107/Downstream/153881;
Nearest TSS
ENST00000439456/Upstream/3329; ENST00000432452/Downstream/97240;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/51345, chr10-CpG: 60/Downstream/988654
Nearby gene
KLF6(No orient, 51998)
Nearest cancer related gene
KLF6(OG, No orient, 51998)
Upstream sequence
catatagtaattgctgtatttgtattggtttttCATCTCCCCAAATTAAAAAAAATAAACAAAAacttctagatttcttgtaagcatagaatcagttaac
Downstream sequence
atactccaaacaattagaacgatgtctggcatatagtaattgctGTGTTTGTATTGGTTTTTCATCCCCCCTCCATTAAAAAGAACAACTCACCATCTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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