Basic Information
VIS ID
TVIS30005533
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
3920915/3878723 (Hg38)
End
3920915/3878723 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/1802634; hsa-mir-107/Downstream/112437;
Nearest TSS
ENST00000439456/Upstream/44773; ENST00000432452/Downstream/55796;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/92789, chr10-CpG: 60/Downstream/947210
Nearby gene
KLF6(No orient, 93442)
Nearest cancer related gene
KLF6(TSG, No orient, 93442)
Upstream sequence
ACGGGAAATCTTAGTGGAGAAAGTAACGTATTAGTGCCTATGACACACACAAGTGAATGTAcaggtgacccttgaacaaggccagtttgaactgcatggg
Downstream sequence
tcccccttttacagggattttttccagcaaatcgcagatccaaaatatagcattggagggaggcaaaattcacatatatcaacagctgactttttgtaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate