Basic Information
VIS ID
TVIS30005534
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
4171982/4129790 (Hg38)
End
4171982/4129790 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/138531; hsa-mir-107/Downstream/2022406;
Nearest TSS
ENST00000439456/Upstream/78064; ENST00000434902/Downstream/113853;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/343856, chr10-CpG: 60/Downstream/696143
Nearby gene
LOC101927964(No orient, 40777)
Upstream sequence
TATCAATAGCTTGAAAAACACAAGTGTGGGATAGGCTGTTTTGGATCATAAAGTTCTGCTCAAAGGGTGAATCCATTAGCCACAAGTCACTGGAGCTACT
Downstream sequence
GTCTGCAATGACAAATTTGTTTCCACTAATTGAGAAGCCAGTAAAGGCATCAACTACAGATGTAAAATTTTCTTCATGTACAAGAAGGGGGAAAAAACAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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