Basic Information
VIS ID
TVIS30005537
Fusion event
HIV-TASOR2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
5777876/5735913 (Hg38)
End
5777876/5735913 (Hg38)
Orient
-
Location type
Intronic
Target gene
TASOR2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-504-5p ; hsa-mir-149-5p ; hsa-mir-29a-5p ; hsa-mir-142-3p ; hsa-mir-320a ; hsa-mir-340-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-513a-3p ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-513c-3p ; hsa-mir-320d ; hsa-mir-4280 ; hsa-mir-3606-3p ; hsa-mir-3674 ; hsa-mir-4429 ; hsa-mir-6073 ; hsa-mir-6512-5p ; hsa-mir-4330 ; hsa-mir-4699-3p ; hsa-mir-106a-3p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-4252 ; hsa-mir-549a
Nearest miRNA
hsa-mir-5699/Upstream/1744654; hsa-mir-107/Downstream/416283;
Nearest TSS
ENST00000439456/Upstream/5251; ENST00000487196/Downstream/8154;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/50179, chr10-CpG: 132/Downstream/76830
Upstream sequence
TATAAATGGCCTTATTTATGACTAAATGCAGAAGCAAGTAGTATCTGGCATTATTTTTCTAGACCATTATCAATTATAAAAATAGAAGATTATAAGTTTA
Downstream sequence
TCTAAAGGGAATTATAAACAGACTGTCCAAAACTGTCAGTAATCCAGAATCCTGTATTTAGttttatttatttagagacagggtctcactttacaatcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate