Basic Information
VIS ID
TVIS30005541
Fusion event
HIV-LOC101928080 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
6165263/6123300 (Hg38)
End
6165263/6123300 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928080
Nearest miRNA
hsa-mir-5699/Upstream/2132041; hsa-mir-107/Downstream/28896;
Nearest TSS
ENST00000439456/Upstream/9153; ENST00000639949/Downstream/21634;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/33489, chr10-CpG: 153/Downstream/21257
Nearby gene
RBM17(No orient, 5841)
Upstream sequence
ggcacatcccaccatgcccagctaatttttgtattttttgtagagacggggtttcaccatgttgcctagccttgtctcgaactcctggactcaagcaatc
Downstream sequence
ctcctgccttgacctcccaaagtgtggggattacaggcactgagccactgcacctggtcAATGCATTTTTAAATATGGTCTAAGGGTATCAGCAAGTTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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