Basic Information
VIS ID
TVIS30005548
Fusion event
HIV-KIN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
7825715/7783752 (Hg38)
End
7825715/7783752 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIN
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-6864-3p ; hsa-mir-4753-3p ; hsa-mir-3672 ; hsa-mir-873-3p ; hsa-mir-130b-5p ; hsa-mir-3681-3p ; hsa-mir-2116-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p
Nearest miRNA
hsa-mir-3155a/Upstream/1631475; hsa-mir-107/Downstream/4347008;
Nearest TSS
ENST00000439456/Upstream/8874; ENST00000462760/Downstream/4229;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/116612, chr10-CpG: 77/Downstream/3873
Upstream sequence
AACATATTAAATCTGTACCTTCTTAAAATGACAGGAAAAAAACATACAAGTTTTGACTTAGTATACCTCTCCTTAATATTTGACCCTCATTCTTCACTAG
Downstream sequence
TAATAGAAACAAAAAATGTGCCTTTCTTGTATTCCCTATCTCTATCTGAAGCACAAGCACCCAAGCCATGAAACCAGACAACATCCTAGATTCCTTCTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate