Basic Information
VIS ID
TVIS30005549
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
End
9029151/8987188 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/2834911; hsa-mir-107/Downstream/3143572;
Upstream sequence
AAGCTGTCACCAACAGAGTCATTATAATGGCCGAGACAGAGTATCCCGATAACTCTGCATTATTCTGCTGGAGTCACTCTGTGCCACTGCATGATTGAGC
Downstream sequence
GTCTCCCTCCCGTTTAGAAAAGACTTGGTTCATGTTACCACTGTAAACTCAATCCCTGAACATATCGCCTCACAGCAACAGGACAAAATGCAAATGAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate