Basic Information
VIS ID
TVIS30005556
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
14915093/14873094 (Hg38)
End
14915093/14873094 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/436433; hsa-mir-107/Downstream/2972013;
Nearest TSS
ENST00000439456/Upstream/22379; ENST00000412254/Downstream/5592;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/34052, chr10-CpG: 155/Downstream/5227
Nearby gene
HSPA14(No orient, 1353)
Upstream sequence
GTTATTAGTTATTTCTTAGGATCTTTTTCCAAAGTCATAGAAAATTTGAAATAAAAGTGATTTTGGTATAAGCAATTCAGTGGCTTCAGAACACAGGAAA
Downstream sequence
ACACCAACTGAACTAGTTCTACTGCTAGGTCTACATGCTTTCAATTATGCTTTGAAAAACTTTTAGGATTTTATTTTGTGGTTATTGTTAGCTTTTAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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