Basic Information
VIS ID
TVIS30005557
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
15933077/15891078 (Hg38)
End
15933077/15891078 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/1454417; hsa-mir-107/Downstream/1954029;
Nearest TSS
ENST00000439456/Upstream/30558; ENST00000434386/Downstream/387623;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/30675, chr10-CpG: 40/Downstream/545726
Nearby gene
MINDY3(No orient, 30558)
Nearest cancer related gene
MINDY3(TSG, No orient, 30558)
Upstream sequence
acaaagaaaaaggaggaaggaagaagaaaggaaaaaCAGTTTTAAATAATAGAACAGAGATGATCATATGATTCCCTTCCTGGAAAAACTAAGAGAACCA
Downstream sequence
ATTGACTGGTTATGTAATCTTGGAATGCAAGAGGAATTTCTAAGTGTATTCTCAGAGGCAGAAATGTAGAAGGTTAAGATTGCCATATGATAAATTAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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