Basic Information
VIS ID
TVIS30005558
Fusion event
HIV-RSU1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
16744800/16702801 (Hg38)
End
16744800/16702801 (Hg38)
Orient
+
Location type
Intronic
Target gene
RSU1
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-7-5p ; hsa-mir-409-3p ; hsa-mir-409-5p
Nearest miRNA
hsa-mir-1265/Upstream/2266140; hsa-mir-107/Downstream/1142306;
Nearest TSS
ENST00000439456/Upstream/180796; ENST00000497849/Downstream/114582;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/181081, chr10-CpG: 68/Downstream/114289
Upstream sequence
ttataggttcacaggtggaagggaccagccttgtctgaggtgagactttggacttttgagttaatgctggaatgagttaagactttgggggacagttggg
Downstream sequence
aaggcatgattatattttgcaatgtaagaagaatacaagatttggaggggccaggggcagaatgatatcgtttggatctgcaaccctgcccaagtcacag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate