Basic Information
VIS ID
TVIS30005560
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.33
Reference genome
GRCh37/hg19
Start
17549138/17507139 (Hg38)
End
17549138/17507139 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/3070478; hsa-mir-107/Downstream/337968;
Nearest TSS
ENST00000439456/Upstream/52809; ENST00000486183/Downstream/96605;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/52417, chr10-CpG: 110/Downstream/109527
Nearby gene
ST8SIA6(No orient, 52884)
Upstream sequence
GAAGAAACAAGATGTTTTGACCACCAGTGAGGGTGATTAGGTGCAAtggtagatcatttccaaagatggttgccaataattgccacagtccctgaatgtg
Downstream sequence
caagccactcctttcatcaagattcatcaatctatctctctcccccttgaatctgggctatgctgtatcttgctttgaccaagagaacataatggaagtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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