Basic Information
VIS ID
TVIS30005562
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
19237756/18948827 (Hg38)
End
19237756/18948827 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/1103634; hsa-mir-107/Downstream/1603143;
Nearest TSS
ENST00000439456/Upstream/202394; ENST00000492202/Downstream/99944;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/238366, chr10-CpG: 140/Downstream/866695
Nearby gene
MALRD1(No orient, 99944)
Upstream sequence
gtcttcttctgtttttatgcttattttggctttaattgagtatttcacatgattccattttttctttctcattataaatatatatatatatatatatata
Downstream sequence
tatatatatatatatacttatattttgttgttgcccgtgagttcacagtatgcatttacaactaatccaaatatacttctttgtgggtagtgtaagtgcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate