Basic Information
VIS ID
TVIS30005563
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
21613496/21324567 (Hg38)
End
21613496/21324567 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/772521; hsa-mir-107/Downstream/171995;
Nearest TSS
ENST00000439456/Upstream/150213; ENST00000471315/Downstream/48383;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/149688, chr10-CpG: 258/Downstream/169702
Nearby gene
NEBL-AS1(No orient, 149644)
Upstream sequence
GTGAAGATAGTAGAAGTTTGAGGCTTAGCTGAAATGGAAAAACATAAATTTAAtttttgttcattcttttttttctttttcgagacgcagtctcactctg
Downstream sequence
ttccccaggctggagtgcagtggcacgatctctactcactgcaacctctgccgaggttcaagcgattctcctgcctcagcctcctgaatagctgggatta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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