VISDB Viral Integration Site DataBase

VIS ID

TVIS30005564

Fusion event

HIV-MLLT10 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p12.31

Reference genome

Start

End

21918978/21630049 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-132-3p ; hsa-mir-125a-3p ; hsa-mir-190a-3p ; hsa-mir-1915-3p ; hsa-mir-3691-3p ; hsa-mir-4480 ; hsa-mir-4726-3p ; hsa-mir-5011-5p ; hsa-mir-5588-3p ; hsa-mir-6764-5p ; hsa-mir-6840-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-33a-3p ; hsa-mir-106a-3p ; hsa-mir-548b-3p ; hsa-mir-1252-3p ; hsa-mir-4511 ; hsa-mir-5680 ; hsa-mir-552-5p ; hsa-mir-202-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-4699-3p ; hsa-mir-5582-3p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7i-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-526b-5p ; hsa-mir-4753-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-548v ; hsa-mir-610 ; hsa-mir-4328 ; hsa-mir-4438 ; hsa-mir-802 ; hsa-mir-2054 ; hsa-mir-192-3p ; hsa-mir-4724-5p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-8084 ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-302c-5p ; hsa-mir-1279 ; hsa-mir-494-3p

Nearest miRNA

hsa-mir-1265/Upstream/133408; hsa-mir-107/Downstream/2645636;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/94568, chr10-CpG: 77/Downstream/372996

Upstream sequence

agacctcatctcttaaaacaaaaaattaaaaaagaaTCTCAGATTTGAAGACAAAAGGGAGGAGGCAGGAAAAATGATACTATGTCTTCTTCTGTTTTGG

Downstream sequence

TGGGGAAGAAAGAAGAGAAGCATGTAGGTGAATAACTAGGTCACCTGGGTAGTAGAGCAAAGAAACTAGATGTGGGTTGAACCCTATCAGAGATATTGCT