Basic Information
VIS ID
TVIS30005565
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
22588841/22299912 (Hg38)
End
22588841/22299912 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/803271; hsa-mir-107/Downstream/1975773;
Nearest TSS
ENST00000439456/Upstream/42126; ENST00000472673/Downstream/16062;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/46102, chr10-CpG: 102/Downstream/16066
Nearby gene
COMMD3(No orient, 16471)
Upstream sequence
ccaccacacctggctaatttttagatttttttgtagagacagggtcccacactatgttgcccaggctggtctccaactcctaggctcaattgatcctccc
Downstream sequence
cactcagcctcccaaagtgctggaattacaagtgtgaactactgtgcttagccaacaaatatttattgagcacctattatttgcaaaagactatggcaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate