VISDB Viral Integration Site DataBase

VIS ID

TVIS30005566

Fusion event

HIV-BMI1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p12.2

Reference genome

Start

End

22619181/22330252 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-128-3p ; hsa-mir-302b-3p ; hsa-mir-203a-3p ; hsa-mir-708-5p ; hsa-mir-200b-3p ; hsa-mir-194-5p ; hsa-mir-218-5p ; hsa-let-7g-5p ; hsa-mir-33a-5p ; hsa-mir-106b-3p ; hsa-mir-27a-3p ; hsa-mir-544a ; hsa-mir-494-3p ; hsa-mir-495-3p ; hsa-mir-300 ; hsa-mir-30e-5p ; hsa-mir-302a-3p ; hsa-mir-183-5p ; hsa-mir-379-3p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-4495 ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548n ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-580-5p ; hsa-mir-3120-3p ; hsa-mir-3942-5p ; hsa-mir-4703-5p ; hsa-mir-376c-3p ; hsa-mir-320a ; hsa-mir-586 ; hsa-mir-452-5p ; hsa-mir-487b-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-153-5p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-4666a-3p ; hsa-mir-338-5p ; hsa-mir-15a-3p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-3622b-5p ; hsa-mir-200c-5p ; hsa-mir-128-1-5p

Nearest miRNA

hsa-mir-1265/Upstream/833611; hsa-mir-107/Downstream/1945433;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/4247, chr10-CpG: 225/Downstream/4169

Nearest cancer related gene

BMI1(OG, No orient, 0)

Upstream sequence

GTACTACCGTTTATTTTACTGACTTGTTTAAATGATTCGCTTTTGTAAGAATCAGATGGCATTATGCTTGTTGTACAATGCCATATTGGTATATGACATA

Downstream sequence

ACAGGAAACAGTATTGTATGATATATTTATAAATGCTATAAAGAAATATTGTGTTTCATGCATTCAGAAATGATTGTTAAAATTCTCCCAACTGGTTCGA