Basic Information
VIS ID
TVIS30005567
Fusion event
HIV-PRTFDC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
25196344/24907415 (Hg38)
End
25196344/24907415 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRTFDC1
Nearest miRNA
hsa-mir-1265/Upstream/631634; hsa-mir-107/Downstream/3381843;
Nearest TSS
ENST00000439456/Upstream/183747; ENST00000610158/Downstream/45169;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/182528, chr10-CpG: 72/Downstream/44766
Upstream sequence
tgggtgtggtggctcatgcctgtaatcccagcactttcggaggctgaggcgggtggatcacttgaggtcaggagttcgagaccagcatggtcaacatggt
Downstream sequence
gaaaccccatctctactaaaaaatataaaaattagctgggtgtggtggcgcacgcctgtagtccccattactcgggaggctgaggtgggagaatcacttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate