VISDB Viral Integration Site DataBase

VIS ID

TVIS30005572

Fusion event

HIV-ACBD5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p12.1

Reference genome

Start

End

27512173/27223244 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-5010-3p ; hsa-mir-548aw ; hsa-mir-4671-3p ; hsa-mir-223-5p ; hsa-mir-6073 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1282 ; hsa-mir-5707 ; hsa-mir-511-3p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-1277-5p ; hsa-mir-142-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-3668 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4540 ; hsa-mir-6723-5p ; hsa-mir-545-3p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-5697 ; hsa-mir-4272 ; hsa-mir-6838-3p ; hsa-mir-3942-5p ; hsa-mir-4703-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1273e ; hsa-mir-3190-3p ; hsa-mir-3689d ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-495-5p ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-122-3p

Nearest miRNA

hsa-mir-1265/Upstream/2947463; hsa-mir-107/Downstream/1066014;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/67679, chr10-CpG: 70/Downstream/17045

Upstream sequence

TGCAGAATTCTTTTGACATGTAAATTTTAAACAAAACTTTTACATGATTTCATGATTCCTACCTTCTAAACATTTAGAGATTTTCTCCAGTCGGACTGGC

Downstream sequence

GCGTGAAAGTAAGAAAAAAAATCAGAGATACAAATATTAATATGTGCATAATATATCAGTTGATGAATTTAAAAATAGGTAAAATAGTCCAACCTGAGGT