Basic Information
VIS ID
TVIS30005573
Fusion event
HIV-MPP7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
28576512/28287583 (Hg38)
End
28576512/28287583 (Hg38)
Orient
-
Location type
Intronic
Target gene
MPP7
miRNAs that regulate target gene
hsa-mir-32-5p
Nearest miRNA
hsa-mir-1265/Upstream/4011802; hsa-mir-107/Downstream/1675;
Nearest TSS
ENST00000439456/Upstream/5445; ENST00000634334/Downstream/15717;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/288455, chr10-CpG: 69/Downstream/14891
Nearby gene
MIR8086(No orient, 1675)
Upstream sequence
ctttgtggtatttaaatccattggtctttctttcattttggatctttcttattcatgcatgatttggaaaatactggctcatggaaataaatgttagcac
Downstream sequence
attttataatgcCAAATAcaggagtgtatacatttgtccaaactcaacaaattctatacattgattatatgcaggtttttgtataccaattatatctcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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