Basic Information
VIS ID
TVIS30005575
Fusion event
HIV-ZNF438 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
31243416/30954487 (Hg38)
End
31243416/30954487 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF438
Nearest miRNA
hsa-mir-1265/Upstream/585822; hsa-mir-107/Downstream/4125111;
Nearest TSS
ENST00000439456/Upstream/31099; ENST00000605929/Downstream/29939;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/168983, chr10-CpG: 74/Downstream/77067
Upstream sequence
agagttacagaattactattaaggcttggggcctactaccagtaaagcgtggtttcaggataaaaatctctacagcatggctgtaaaacaccttgttgag
Downstream sequence
actgaaagactaaaatcgtatctagttcagttctaagaatcttaagagtatgacacttagattctgttctaaggcaaaaggcctctaagaatcttgatga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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