Basic Information
VIS ID
TVIS30005598
Fusion event
HIV-LOC105378316 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
60210466/58450706 (Hg38)
End
60210466/58450706 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10C
Target gene
LOC105378316
Nearest miRNA
hsa-mir-1265/Upstream/1146147; hsa-mir-107/Downstream/4922251;
Nearest TSS
ENST00000439456/Upstream/65102; ENST00000476684/Downstream/62434;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/65131, chr10-CpG: 121/Downstream/62034
Nearby gene
TFAM(No orient, 51476)
Upstream sequence
gccagggtgaaagagagagaccttgtctcaaaaaacaaaacaaaatgaaaaaacaagaaaaACTTGATAACCCCTGTGTACAGATTGAAAGAGATACTTA
Downstream sequence
TAAGGATAAGAAACATTTTCTCCCATCACTCAAATCACAGCAGGTGTCAACATCTTACTTCGCTGACACATGTAATAATATAGAAAGTCTagaaaataga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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