Basic Information
VIS ID
TVIS30005600
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
61142606/59382848 (Hg38)
End
61142606/59382848 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/2078289; hsa-mir-107/Downstream/3990109;
Nearest TSS
ENST00000439456/Upstream/19667; ENST00000647375/Downstream/195619;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/20070, chr10-CpG: 112/Downstream/326004
Nearby gene
FAM13C(No orient, 19945)
Upstream sequence
CAGTGGACAGAGTGGGAATGAGAAAGGCAGATGATTGATGAAGAGTTAAGAGTAAAGTTGAAATGCAATAATTCTGTCTGAAATCTTCTCTAAATACAAA
Downstream sequence
CCACTAAAGAAATAAACTTTCTTTAAAACTCATAATTGCCGATGTTGACCTTGGCCTCTCCAAATACCTTAGGACGTCAGAGCTGAAGGCTCTGGACTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate