Basic Information
VIS ID
TVIS30005609
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
67672180/65912422 (Hg38)
End
67672180/65912422 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/2539374; hsa-mir-107/Downstream/1490929;
Nearest TSS
ENST00000439456/Upstream/296685; ENST00000608793/Downstream/166681;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/858119, chr10-CpG: 39/Downstream/1851663
Nearby gene
CTNNA3(No orient, 96)
Nearest cancer related gene
CTNNA3(TSG, No orient, 96)
Upstream sequence
ATTCTATCAGATATGCTTCAGATTACTTGTGTGCATGCAGTAGTTTGGAAAAGTGCCTTCCTGAATTATAAATATAAAACTGAAAGAGGATGAGAGTGAA
Downstream sequence
GGTGACACTTAGAAACACATGGTTGGACTACTCAGCAATTTATTAATCTCCATTTTTTTCATCCCACCCAAGAAATCCGCCACCAAATATCAACATAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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