Basic Information
VIS ID
TVIS30005612
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
69627811/67868053 (Hg38)
End
69627811/67868053 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/464643; hsa-mir-107/Downstream/3922694;
Nearest TSS
ENST00000439456/Upstream/18528; ENST00000497639/Downstream/16616;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/18089, chr10-CpG: 96/Downstream/16358
Nearby gene
SIRT1(No orient, 16616)
Nearest cancer related gene
SIRT1(OG, No orient, 16616)
Upstream sequence
ttttatcaaaaactttgtgttgtatagaatttaacaatatttaatatcccccaaacttccttaaacaaggtgcctctaatagaagaaaattaggtacagc
Downstream sequence
taatggttggtaagtcttgccaaacttctcacaaactgagaaaatgaatgactctaatgactgagtaaaaatccttttgaaagtaaggtagtttccagtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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