VISDB Viral Integration Site DataBase

VIS ID

TVIS30005616

Fusion event

HIV-AIFM2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q22.1

Reference genome

Start

End

71878106/70118350 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-140-3p ; hsa-mir-15b-5p ; hsa-mir-150-5p ; hsa-mir-6873-3p ; hsa-mir-4713-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-153-5p ; hsa-mir-875-5p ; hsa-mir-6800-3p ; hsa-mir-5089-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-377-3p ; hsa-mir-6735-3p ; hsa-mir-4493 ; hsa-mir-3185 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-342-3p ; hsa-mir-1224-3p ; hsa-mir-6826-5p ; hsa-mir-5197-3p ; hsa-mir-6757-3p ; hsa-mir-603 ; hsa-mir-214-5p ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-5584-3p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-3168

Nearest miRNA

hsa-mir-1265/Upstream/2714940; hsa-mir-107/Downstream/1672397;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/64413, chr10-CpG: 71/Downstream/13986

Upstream sequence

GGCATTCCAACAGTCAATCAGACTGATGTCAACATTAAAGCTTGTTTAAAATTAGTGCTTCCAGGCATGTCTACTTGCTGTCTGGGACAACACAGGGAAG

Downstream sequence

CGTCCCGGGCACCTCATGTTGCAATCATgttcaaagcctgggctttggtatcaaattgcctgggttgaaatcccatctctgatactcacttggacacctc