Basic Information
VIS ID
TVIS30005621
Fusion event
HIV-VSIR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
73513399/71753642 (Hg38)
End
73513399/71753642 (Hg38)
Orient
-
Location type
Intronic
Target gene
VSIR
miRNAs that regulate target gene
hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6835-5p ; hsa-mir-6752-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-6081 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-922 ; hsa-mir-759 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-16-1-3p
Nearest miRNA
hsa-mir-1265/Upstream/4350232; hsa-mir-107/Downstream/37105;
Nearest TSS
ENST00000439456/Upstream/15818; ENST00000642965/Downstream/3988;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/91697, chr10-CpG: 49/Downstream/19692
Upstream sequence
GAAACCTTACAAGGTGCAAGTCCCCGATCACTTCCCAGCCACTTCACTCACTTTCTGCTTCTCATCCAAGTTGCTGCCGCTTGCCTCAGCCTTGGGACAC
Downstream sequence
CCCACCCCCCAAACTGGCCACCAATTAGATGCAGTGACCCCAACTTCCCTCTTTCATGCAGCACCCCATGTCCTCCCACAGATGCTTCTCGTTTTAAGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate