Basic Information
VIS ID
TVIS30005622
Fusion event
HIV-CHST3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
73727634/71967876 (Hg38)
End
73727634/71967876 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHST3
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-98-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3620-5p ; hsa-mir-4674 ; hsa-mir-1587 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-4437 ; hsa-mir-6131 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-5695 ; hsa-mir-3663-5p ; hsa-mir-519d-5p
Nearest miRNA
hsa-mir-1265/Upstream/177076; hsa-mir-107/Downstream/753153;
Nearest TSS
ENST00000439456/Upstream/3511; ENST00000478193/Downstream/86161;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2864, chr10-CpG: 122/Downstream/39522
Upstream sequence
ttacatacccatcagcagtgtataagcactctgttttttgttttttgtttttggtgggagtggtgggatggagtcttgctctgtcaccaggctggagtac
Downstream sequence
agtggtgcgatcttggctcactgcaacttccacctcccaggttcaagcaattcccctgcctcagccccctgataggcgtgcaccaccatgcgtggctaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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