Basic Information
VIS ID
TVIS30005624
Fusion event
HIV-ASCC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
73885605/72125847 (Hg38)
End
73885605/72125847 (Hg38)
Orient
+
Location type
Intronic
Target gene
ASCC1
miRNAs that regulate target gene
hsa-mir-1287-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-335-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-451b ; hsa-mir-543 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-944 ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-548n ; hsa-mir-6840-3p ; hsa-mir-500b-3p ; hsa-mir-224-5p ; hsa-mir-6776-3p
Nearest miRNA
hsa-mir-1265/Upstream/335047; hsa-mir-107/Downstream/595182;
Nearest TSS
ENST00000439456/Upstream/36815; ENST00000478193/Downstream/8616;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/37372, chr10-CpG: 44/Downstream/90066
Upstream sequence
TACTAAAGGATACGTCATCATAACTATCTGTGGTCAAAGgcacttgtccataactcaccccatggtttttatattctaattgtctattaactatctgtac
Downstream sequence
ccctcacggactggaagctcctagaaggcagggattgtatcataatgactgtttcatctttaaggcacatagtctggcagatggtatatagtcaataagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate