Basic Information
VIS ID
TVIS30005626
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
74436753/72676995 (Hg38)
End
74436753/72676995 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/886195; hsa-mir-107/Downstream/44034;
Nearest TSS
ENST00000439456/Upstream/50804; ENST00000603649/Downstream/15136;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/50712, chr10-CpG: 79/Downstream/15075
Nearby gene
MCU(No orient, 15136)
Upstream sequence
ggctggagttcagtggcgcgatctgggctcactgcaagctccgcctcccgggttcacgccattctccttccttagcctcccgagtagctgggactacaag
Downstream sequence
gcgcccaccaccatgcctggctaatttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgaactcatgatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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