Basic Information
VIS ID
TVIS30005629
Fusion event
HIV-ECD integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
74899078/73139320 (Hg38)
End
74899078/73139320 (Hg38)
Orient
+
Location type
Exonic
Target gene
ECD
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-361-5p
Nearest miRNA
hsa-mir-1265/Upstream/418220; hsa-mir-107/Downstream/2413138;
Nearest TSS
ENST00000439456/Upstream/4566; ENST00000607940/Downstream/28628;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/42093, chr10-CpG: 25/Downstream/28564
Upstream sequence
AAAAAAAAAAAAAGTGGAAATGGCAATGACTATGACTTCAACATTTGGGTTCTAGCTATTTATATATTTATACTTTAACACAAATTACCGAGGCAGCTCT
Downstream sequence
GCTCCCTTGTGGGTTGAGACTTTGGATATGAAAGCTTTCATGCTCTCTGAGACTTCAGTTAAGTCATAGTTCTGCTCCTTCTCCTCCTTGGAAACAGACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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