Basic Information
VIS ID
TVIS30005633
Fusion event
HIV-AP3M1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
75899062/74139304 (Hg38)
End
75899062/74139304 (Hg38)
Orient
+
Location type
Intronic
Target gene
AP3M1
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-101-3p ; hsa-mir-21-5p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-185-5p ; hsa-mir-10b-5p ; hsa-mir-100-5p ; hsa-mir-25-3p ; hsa-let-7b-5p ; hsa-mir-4279 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-2116-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-5571-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-214-3p ; hsa-mir-3162-5p ; hsa-mir-3619-5p ; hsa-mir-4291 ; hsa-mir-4425 ; hsa-mir-4445-5p ; hsa-mir-455-3p ; hsa-mir-5186 ; hsa-mir-6757-5p ; hsa-mir-761 ; hsa-mir-922
Nearest miRNA
hsa-mir-1265/Upstream/1418204; hsa-mir-107/Downstream/1413154;
Nearest TSS
ENST00000439456/Upstream/9300; ENST00000478611/Downstream/11453;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/140835, chr10-CpG: 50/Downstream/11774
Upstream sequence
aatccacacacacacaaaaaaaaacctattagagctaataaatttagttcagcaagcttgcaggacacaagtcaatataaaaatcaattatatttctatc
Downstream sequence
cactatagctataaaatactaaaaatgggctaggcattgtaactcatgcctataaacccagcactgtgggaggctgaggaaggaggattgcttgagctca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate