Basic Information
VIS ID
TVIS30005644
Fusion event
HIV-SFTPD integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
81729226/79969470 (Hg38)
End
81729226/79969470 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
SFTPD
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1265/Upstream/4416917; hsa-mir-107/Downstream/6295224;
Nearest TSS
ENST00000439456/Upstream/1257; ENST00000463209/Downstream/13144;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/64150, chr10-CpG: 110/Downstream/12002
Nearby gene
SFTPD(No orient, 20365)
Upstream sequence
gactgaggcaggggaatcacttgaaactgaaagtgggaggttgcagtgagctgagattgcatcactgcaccccagcctaggggaaagagcaaaactccgt
Downstream sequence
ctcaaaagaaaaaaaaaatctggatattagacctttatcagatgcgtagttcgtgaatattttcattttctccacatcctcaacaacacttattatcctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate