Basic Information
VIS ID
TVIS30005645
Fusion event
HIV-LOC101929574 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
82291464/80531708 (Hg38)
End
82291464/80531708 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA10D
Target gene
LOC101929574
Nearest miRNA
hsa-mir-1265/Upstream/4979155; hsa-mir-107/Downstream/5732986;
Nearest TSS
ENST00000439456/Upstream/16241; ENST00000646907/Downstream/4234;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/76704, chr10-CpG: 56/Downstream/4037
Upstream sequence
CAATATAGAGTTCACTATTCCTCAATATTTTCAAGGCTGTTTCTTATCTGTTCATTCTTTTGGTTAACTTGGGAATTATTTTATCAAGTCTCTCTACTTC
Downstream sequence
CCAATTTCCTTTCACCTTTGGCTCGAAATGATATTCAATGTATACATTAACTTGAGTTACATTTTGCTGCATAATGCTTGAGTTACATTTTGAGTATTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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