Basic Information
VIS ID
TVIS30005646
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
85195806/83436050 (Hg38)
End
85195806/83436050 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/7883497; hsa-mir-107/Downstream/2828644;
Nearest TSS
ENST00000439456/Upstream/636308; ENST00000372134/Downstream/239389;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/1560077, chr10-CpG: 24/Downstream/128893
Nearby gene
NRG3(No orient, 448871)
Upstream sequence
AAAAGACTCATTTGTGAGAACTAGTTTAAATTGTTTTTAATTTATATTAGTATGGCCCTTGACTTTTGGGATACGGATACCTATTTGTTTGTAAGACTTT
Downstream sequence
CTTTCCCATAAACGGCTTTTGTTTTTCTATTTTGTTTAATGGAGTGCTTGTCTTAAAACTTTCCCTTCTTTAAGCTGTTATTGGAAGTCATCTGGATCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate