Basic Information
VIS ID
TVIS30005647
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
85502219/83742463 (Hg38)
End
85502219/83742463 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/8189910; hsa-mir-107/Downstream/2522231;
Nearest TSS
ENST00000439456/Upstream/67024; ENST00000372134/Downstream/170459;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/177217, chr10-CpG: 51/Downstream/396839
Nearby gene
GHITM(No orient, 396966)
Upstream sequence
ctcacatttaagtctttaatccatcttgaattaaatgttgtttaaggtataaggaagggatccagtttcagctttctacatatggctagccagttttccc
Downstream sequence
agcaccatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtactatttctcaggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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