Basic Information
VIS ID
TVIS30005648
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
86515322/84755566 (Hg38)
End
86515322/84755566 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/9203013; hsa-mir-107/Downstream/1509128;
Nearest TSS
ENST00000439456/Upstream/303349; ENST00000435367/Downstream/442392;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/214369, chr10-CpG: 47/Downstream/1507317
Nearby gene
CCSER2(No orient, 237045)
Upstream sequence
GTTACGGCCTGACTTTCATTAAGAACGTCTCAGTCATCGAGTTGAATCAGGACCTGACTCTGGGGTGGGATTGCTTTGCAGGGATGTATTCCAAGAGGCT
Downstream sequence
TTGTAGCGAACCCATTACTTTAGACACGGCCAAGAAGGAGAATGCGGTTTTGTTTGGTGAAAAAATAAGATTGCAGCCATCAGGGAAAATAGGAAAGGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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