Basic Information
VIS ID
TVIS30005653
Fusion event
HIV-NUTM2A-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
89095333/87335576 (Hg38)
End
89095333/87335576 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA10D
Target gene
NUTM2A-AS1
Nearest miRNA
hsa-mir-1265/Upstream/1070788; hsa-mir-107/Downstream/168305;
Nearest TSS
ENST00000439456/Upstream/4624; ENST00000465545/Downstream/1232;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/112371, chr10-CpG: 125/Downstream/6382
Upstream sequence
aatctgcattcccactgcatgaatttgactattcatgatctttcatataagtagaatcatatactgtttgtccttttgtgtctggcttattttatttagc
Downstream sequence
ataatattttcaaggtttacccatgttgtaaacatgtatcagaacatcattccctttttatggctaaataatcttcccttgtatgtacatgccacatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate