Basic Information
VIS ID
TVIS30005662
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
97353088/95593331 (Hg38)
End
97353088/95593331 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-107/Upstream/6000504; hsa-mir-1287/Downstream/470984;
Nearest TSS
ENST00000439456/Upstream/31917; ENST00000461927/Downstream/23366;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/31605, chr10-CpG: 94/Downstream/62772
Nearby gene
ALDH18A1(No orient, 12598)
Upstream sequence
gcacagatttggcaaataccccctgggaagaaaatggtcagagacaatcagcacatttagaaagggctctttccggccgggcgcagtggctcacgcctgt
Downstream sequence
agtcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccctgtctctaataaaaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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