Basic Information
VIS ID
TVIS30005663
Fusion event
HIV-ZNF518A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
97905691/96145934 (Hg38)
End
97905691/96145934 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
ZNF518A
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-107/Upstream/81535; hsa-mir-1287/Downstream/682735;
Nearest TSS
ENST00000439456/Upstream/15255; ENST00000614149/Downstream/5475;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/15279, chr10-CpG: 20/Downstream/238608
Upstream sequence
agtctagagacaaaaagattgctgttctcacaaagtccaaATGTAAGGTGTTTGCTTGTGCTATCATAAGGTAGTATGCCAGTGTGGAGGCCATGGTGAT
Downstream sequence
CTAAGACAGCATTTTATGAAACACTGACCTAAGAGTAACCAGTGATCACTAGGAACATTTTTGTATGTGTATTCTTCTTGACTTTTAACTTTTGACGCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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