Basic Information
VIS ID
TVIS30005667
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
99485287/97725530 (Hg38)
End
99485287/97725530 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/896766; hsa-mir-1287/Downstream/150283;
Nearest TSS
ENST00000439456/Upstream/10836; ENST00000462887/Downstream/11591;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/10623, chr10-CpG: 64/Downstream/11362
Nearby gene
MARVELD1(No orient, 7378)
Nearest cancer related gene
MARVELD1(TSG, No orient, 7378)
Upstream sequence
agtaacagtagttcattttcattgctgagtgaatatacagatacactataatttgtttagcctgttgatggacatttgtgttgtttcaaatttttggtta
Downstream sequence
ttgcaaatatagctgctttgaacgttcatgtacacgtctttgtgtggacacatatgctttaatttattttgggtagacagctagcagtggaatggctcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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