VISDB Viral Integration Site DataBase

VIS ID

TVIS30005671

Fusion event

HIV-SCD integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q24.31

Reference genome

Start

End

102118559/100358802 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-let-7b-5p ; hsa-mir-1229-3p ; hsa-mir-455-3p ; hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-331-3p ; hsa-mir-328-3p ; hsa-mir-185-5p ; hsa-mir-149-5p ; hsa-mir-10a-5p ; hsa-mir-197-3p ; hsa-mir-92a-3p ; hsa-let-7e-5p ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-631 ; hsa-mir-3190-3p ; hsa-mir-3661 ; hsa-mir-4502 ; hsa-mir-6833-5p ; hsa-mir-7114-5p ; hsa-mir-105-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-607 ; hsa-mir-944 ; hsa-mir-4262 ; hsa-mir-3671 ; hsa-mir-6865-3p ; hsa-mir-7853-5p ; hsa-mir-188-3p ; hsa-mir-605-5p ; hsa-mir-548c-3p ; hsa-mir-1260a ; hsa-mir-3148 ; hsa-mir-1260b ; hsa-mir-4668-5p ; hsa-mir-4668-3p ; hsa-mir-5584-5p ; hsa-mir-5680 ; hsa-mir-22-3p ; hsa-mir-6882-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-544a ; hsa-mir-1321 ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6760-5p ; hsa-mir-142-3p ; hsa-mir-493-5p ; hsa-mir-574-5p ; hsa-mir-3177-5p ; hsa-mir-3659 ; hsa-mir-4658 ; hsa-mir-6740-5p ; hsa-mir-6790-5p ; hsa-mir-95-5p ; hsa-mir-142-5p ; hsa-mir-3173-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-5004-5p ; hsa-mir-5590-3p ; hsa-mir-6891-5p ; hsa-mir-7154-3p ; hsa-mir-548v ; hsa-mir-6730-5p ; hsa-mir-583 ; hsa-mir-646 ; hsa-mir-3133 ; hsa-mir-4468 ; hsa-mir-4511 ; hsa-mir-4660 ; hsa-mir-6501-3p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-3188 ; hsa-mir-3160-5p ; hsa-mir-4712-3p ; hsa-mir-198 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6748-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-424-3p ; hsa-mir-4699-5p ; hsa-mir-3140-5p ; hsa-mir-634 ; hsa-mir-1269b ; hsa-mir-1269a ; hsa-mir-4515 ; hsa-mir-4740-5p ; hsa-mir-1288-3p ; hsa-mir-6857-3p ; hsa-mir-4280 ; hsa-mir-3692-3p ; hsa-mir-6884-3p ; hsa-mir-551b-5p ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-610 ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-211-3p ; hsa-mir-4433a-3p ; hsa-mir-7845-5p ; hsa-mir-4766-3p ; hsa-mir-2861 ; hsa-mir-3908 ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-1224-3p ; hsa-mir-4733-5p ; hsa-mir-625-3p ; hsa-mir-606 ; hsa-mir-4520-3p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-558 ; hsa-mir-4638-3p ; hsa-mir-3690 ; hsa-mir-4459 ; hsa-mir-3120-3p ; hsa-mir-6079 ; hsa-mir-8078 ; hsa-mir-494-5p ; hsa-mir-410-5p ; hsa-mir-323b-5p ; hsa-mir-1254 ; hsa-mir-645 ; hsa-mir-130b-3p ; hsa-mir-1251-3p ; hsa-mir-203b-5p ; hsa-mir-3936 ; hsa-mir-421 ; hsa-mir-4433b-3p ; hsa-mir-4709-5p ; hsa-mir-499b-5p ; hsa-mir-505-3p ; hsa-mir-6071 ; hsa-mir-6505-3p ; hsa-mir-6718-5p ; hsa-mir-6828-3p

Nearest miRNA

hsa-mir-107/Upstream/1434234; hsa-mir-1307/Downstream/616183;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/10837, chr10-CpG: 35/Downstream/14462

Upstream sequence

gttagagatcagccaggccaatatggtgaacctctgtctctacttaaaaaaaaaaaaaaaaaaaagtacaaaaaacttagccaggcatggtggcacgtgc

Downstream sequence

ctgtagtcccagctactcaggaggctgaggcagaagaatcgcttgaacccgggaggcagaggttgcaatgagccgagattgtgccactgcactccagcct