VISDB Viral Integration Site DataBase

VIS ID

TVIS30005680

Fusion event

HIV-NOLC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q24.32

Reference genome

Start

End

103920879/102161122 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-378a-3p ; hsa-mir-365a-3p ; hsa-mir-195-5p ; hsa-mir-222-3p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-4751 ; hsa-mir-4533 ; hsa-mir-5004-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-16-1-3p ; hsa-mir-8083 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-3529-3p ; hsa-mir-4428 ; hsa-mir-1224-5p ; hsa-mir-3674 ; hsa-mir-4795-3p ; hsa-mir-5687 ; hsa-mir-126-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-889-3p ; hsa-mir-6826-5p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-3163 ; hsa-mir-8062 ; hsa-mir-1277-5p ; hsa-mir-551b-5p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-107/Upstream/559625; hsa-mir-1307/Downstream/275390;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/8333, chr10-CpG: 40/Downstream/64973

Upstream sequence

AAAAGCAGCTAAGAACAGTGAGGAGGAGGAAGAAGAAAAGAAAAAGGCGGCAGTGGTAGTTTCCAAATCAGGTCTGTACCCAATGAACATGCCCTCTGGG

Downstream sequence

TTTTGTCCCCCCAAATCAGGATGGGATATACTCTTTGAGAGTAGGGTAGTGAGAGGAGGCCCACCACTGGGCTTCCAGTTGTGGAAACTGGGAGGAAGAA